rs29675780 SNP Detail

Summary

• ID
  rs29675780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10612036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCAAGTC TTTGTTTCAG
  AAGGTTCTTA TGTCTAATGT TTAACTTGTT ATGCTTACAT GCTCCTGGTA CCTGGTTTAT
  TTTGCCTGCC AACCCCCACC CCCACCCCCC ACAATTCGGA AACTACCTAC CCCCGATCTA
  TAAAAAACTT GTCTTCCTCA TATTCAATGC TGACTTCTTA AACTCCGCCT TAGGGATAGG
  Y
  AGCCCAATGT ACATGAATTT TAAAAGCTTA CTTTAATTAA TTTGGCCATG ATGCTTTCTG
  TTGAATGTCT TTCTCCTCAA ATATTTGAGA TTAACAATGA AGATAGCATG GGACTATAAT
  TCTAGAATCC AGTAGGTGGA AACAGATTAT GAATTCTAGA CTAGCCTGGG CTACAGAGGG
  AGAACTTGTC ACTGCTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39603588	mCV27569830	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	C
ss325524305	CHEV_18_10612034	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29675780					SNP	C	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10612036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	1388 bp distal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	1684 bp upstream
Rr533778	regulatory region 533778	1938 bp distal
Rr533780	regulatory region 533780	1194 bp distal
Rr533781	regulatory region 533781	1900 bp distal
Rr533782	regulatory region 533782	1594 bp distal
Tssr152429	transcription start site region 152429	1920 bp upstream
Tssr152430	transcription start site region 152430	1892 bp upstream
Tssr152431	transcription start site region 152431	1748 bp upstream
Tssr152432	transcription start site region 152432	1724 bp upstream
Tssr152433	transcription start site region 152433	1673 bp upstream