rs29675829 SNP Detail

Summary

• ID
  rs29675829
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126774729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAGAGGG CTCCAGGACC
  AAGGAGGAGG AAGCTCCCCA CCCACTCCTA CCCCCGCCCG CGGGTTTCTC CCAGGGGTTG
  GGCATTTCGC TGGATTTCGG GGGCTGGGGG CGGGTGAGGA ATGCTGGGAC TCAAGGACGA
  AGGCAGTTAA CCGGGCCCGG GCAGTGGGAG AATGGGAAGC CAGGGTAGAA GGAGAGGAAG
  K
  GGGAGGTAGG GAAGGAGGAG GGATGAGGGA AATCCGGAGG AGGTTAGAGG GAAAGGAAGG
  GATGGAGGGG GAGGGGGAGG AAGCGGGAGG AAGGGGAGGG AAAAGCGGAG GGGAGGGGAG
  GGGAGTGCGG CTCTCACCAG TCCGAGCAGG CAGCTCCAGA GCAGGGCAGC CGCGGGAGCG
  TGCAGCGAGT GCAGCAGCCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45352774	mCV22628460	ABI	CRAMUS_MOUSE	f	SNP	T	G
ss320498573	CHEV_2_126758545	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29675829					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126774729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12210	CpG island 12210			within coordinates
Gm75308	predicted gene, 75308			within coordinates
Rr564422	regulatory region 564422			within coordinates
Rr564423	regulatory region 564423			246 bp proximal
Rr564424	regulatory region 564424			279 bp proximal
Rr564425	regulatory region 564425			416 bp proximal
Sppl2a	signal peptide peptidase like 2A			Intron
				Noncoding-Transcript-Variant
Tssr26084	transcription start site region 26084			903 bp upstream
Tssr26085	transcription start site region 26085			184 bp downstream
Tssr26086	transcription start site region 26086			313 bp downstream
Tssr26087	transcription start site region 26087			344 bp downstream
Tssr26088	transcription start site region 26088			406 bp downstream
Tssr26089	transcription start site region 26089			420 bp downstream
Tssr26090	transcription start site region 26090			1058 bp downstream