rs29675941 SNP Detail

Summary

• ID
  rs29675941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66134896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAACAATC AATACAAAAG ATGTATCTCG TGTACTAGCT
  ATATAGAGAC ACTAATATAA AGTTTACAGT GTAAAGATCA AAGACGACAC ACGCTGCCAC
  Y
  GAGAGGCAAA TTCTATGGGG TAATCCCAAC ATTTAAAGAA CAACGTCCAA AGACCTTAAA
  AATCACTCTT AACATTCTAT GCTAGCTTGG AGCATTCGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39605268	mCV23116352	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss63157229	NES17452217	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		T	T	C	C	C	C	C	C	C
ss147324384	ENSMUSSNP769151	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29675941					SNP	T	T	T	C	T	T	T	C	T	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63157229	NES17452217	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66134896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	242 bp proximal
Lman1	lectin, mannose-binding, 1	within coordinates
Rr353056	regulatory region 353056	within coordinates
Rr405704	regulatory region 405704	722 bp upstream
Tssr153727	transcription start site region 153727	787 bp downstream