rs29677087 SNP Detail

Summary

• ID
  rs29677087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142949281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTC TGGGTCCAAG TCTCATTCCC
  R
  AGTCAGCCAA CTCCTCCCCC GGCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45849708	mCV23387564	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss144594714	ENSMUSSNP6340480	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29677087					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142949281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16968	CpG island 16968	1012 bp distal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	within coordinates
Rr378736	regulatory region 378736	within coordinates
Rr624075	regulatory region 624075	1681 bp distal
Rr624076	regulatory region 624076	911 bp proximal
Tssr49618	transcription start site region 49618	152 bp upstream