rs29677143 SNP Detail

Summary

• ID
  rs29677143
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24305438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT CGGCCTTTGG TAGAAGAAAA
  S
  CACACGCGAG CTTGGATCAG GCCGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45850116	mCV23236889	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss148083567	ENSMUSSNP508394	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29677143					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24305438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15589	CpG island 15589	within coordinates
Gm71592	predicted gene, 71592	within coordinates
Klhl7	kelch-like 7	165 bp upstream
Rr398996	regulatory region 398996	within coordinates
Tssr45399	transcription start site region 45399	138 bp upstream
Tssr45400	transcription start site region 45400	255 bp upstream
Tssr50303	transcription start site region 50303	27 bp downstream