rs29677305 SNP Detail

Summary

• ID
  rs29677305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:59306903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTACCATG AAAGTGATAA
  AGAATATTCC TTATAGCAGA AGTCTATGAG GTATCAGTTA CATGAAAATT AAAATGGCGA
  AAATAGATGG AAAACCAGAA GAGTCCTGCT TGCTTGGCTA GCTTTATTTT CTAGTTGAAA
  TTCGACATTA AAAAGAATAT GATGGTCTTC ATTCCCATGA ATCTCAGGGC AAGCCCCAGA
  Y
  GTGGAAAGGA AAGGAGGTTC ACTGTCAAAC AGAAGCAACC TTTAGTTAGC TGGGCTTCTG
  TACAGCCAAT GACTGGCGTG GAAAGAACCG TCCTGCAATG ATTCCAGGCA GACTTACTGT
  TCCAGAGATG GTGCCAGCGC CTTGCTCCAC TGAGCCATTA TGCTGAATGC CATTCAATAC
  CATCCCCGTT GAGGTTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39603702	mCV23241547	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147209027	ENSMUSSNP5955864	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29677305					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:59306903 () rs orientation: forward

Symbol	Name	Function Class
Chsy3	chondroitin sulfate synthase 3	1509 bp upstream
Cpgi10086	CpG island 10086	833 bp proximal
Gm54033	predicted gene, 54033	within coordinates
Gm58413	predicted gene, 58413	within coordinates
Rr538516	regulatory region 538516	1329 bp proximal
Tssr151236	transcription start site region 151236	1502 bp upstream
Tssr151237	transcription start site region 151237	1577 bp upstream
Tssr151238	transcription start site region 151238	1641 bp upstream