rs29678087 SNP Detail

Summary

• ID
  rs29678087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35204388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA AGTGAGTGGA AGGCAGTCCC
  Y
  GCCAGTGGGC GTCGAGGCGG GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss45850918	mCV24465205	ABI	CRAMUS_MOUSE	f	SNP		T	C		T	C
ss47678777	NES10266604	PERLEGEN	MM_PANEL2	f	SNP	T			C		C	T		C	T	C
ss148221041	ENSMUSSNP5663334	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C			C
ss321509441	CHEV_5_35389693	CHEVERUD	SCREENING_POP	f	SNP								C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs29678087					SNP	T	T	C	C	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47678777	NES10266604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35204388 () rs orientation: forward

Symbol	Name	Function Class
Hgfac	hepatocyte growth factor activator	within coordinates
Tssr45928	transcription start site region 45928	1773 bp downstream
Tssr45929	transcription start site region 45929	1759 bp downstream
Tssr45930	transcription start site region 45930	551 bp downstream