rs29678153 SNP Detail

Summary

• ID
  rs29678153
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112415800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA CACACAGATC TCTCTCTCTC
  W
  CACACACACA CAGATATATA CACAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45850026	mCV24791737	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss321645165	CHEV_5_112696954	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29678153					SNP	T	A	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112415800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	1338 bp proximal
Crybb1	crystallin, beta B1	within coordinates
Rr617312	regulatory region 617312	1233 bp distal
Tssr47978	transcription start site region 47978	409 bp downstream
Tssr47979	transcription start site region 47979	377 bp downstream
Tssr47980	transcription start site region 47980	1376 bp upstream
Tssr47981	transcription start site region 47981	1523 bp upstream
Tssr47982	transcription start site region 47982	1540 bp upstream
Tssr47983	transcription start site region 47983	1554 bp upstream
Tssr47984	transcription start site region 47984	1563 bp upstream
Tssr47985	transcription start site region 47985	1574 bp upstream
Tssr52559	transcription start site region 52559	572 bp upstream
Tssr52560	transcription start site region 52560	533 bp upstream
Tssr52561	transcription start site region 52561	1551 bp downstream
Tssr52562	transcription start site region 52562	1595 bp downstream