rs29679045 SNP Detail

Summary

• ID
  rs29679045
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144037103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATGTTGG TAAAAATTAG
  AAAAGAAAAA TAAAAAGTAG GAGAAAGAGA GACAAAAGTC CCAGATTAAA TTATGTGGGT
  TATTATGGAC TTCTTTATAT CTTCCTAAAA TAATTGTCGA TGTTACCTGC TGCCCACGCC
  TCATTCCTCT GTCTGCAGGG GGCGCACCGA TCGCCACCTT GCCGCCTATG GCTGAGAGGG
  Y
  GGGGCTCCCG GAGTCAGTAT GGATTGACGA TTGGCTGGTC CAGGTGTCGG TCCCGGCATC
  CCGCCTCAGC TCTACGTCAC ATGACGCAGC CCATCATGGC GGCGGGAGCG CGGCTGCCTG
  GGCCCGCGGC TCCGCAGGCT GGGCGCCGTT GCTGCTGTTG AGGGGCGGCG GCGGCGGCGG
  TGGCGGCGCT GACGGGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45851406	mCV23378517	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss144607483	ENSMUSSNP1791202	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321709184	CHEV_5_144861154	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29679045					SNP	C	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144037103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17002	CpG island 17002	within coordinates
Gm71412	predicted gene, 71412	within coordinates
Lmtk2	lemur tyrosine kinase 2	151 bp upstream
Rr111125	regulatory region 111125	303 bp distal
Rr124743	regulatory region 124743	within coordinates
Rr399492	regulatory region 399492	within coordinates
Tssr49686	transcription start site region 49686	68 bp upstream
Tssr49687	transcription start site region 49687	102 bp upstream