rs29680176 SNP Detail

Summary

• ID
  rs29680176
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92489172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC AAGTCTTAGA AGCTGAGTTC
  M
  AAGCCAGAAC TCACACAACG TAAGG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39106662	mCV23769155	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	C
ss144934145	ENSMUSSNP1588364	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
ss324480469	CHEV_13_93122619	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29680176					SNP	C	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92489172 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	1709 bp proximal
Msh3	mutS homolog 3	within coordinates
Rr403895	regulatory region 403895	1598 bp downstream
Rr403896	regulatory region 403896	1836 bp upstream
Rr483661	regulatory region 483661	1572 bp proximal
Rr483662	regulatory region 483662	1853 bp proximal
Tssr123429	transcription start site region 123429	1839 bp downstream