rs29680692 SNP Detail

Summary

• ID
  rs29680692
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126773825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGATTTACC TTGAGAAAAA TTAGTGGAGC TATGGTATAA GTACGTAAAC ATTATTTCGT
  ATTAATCATC TTAAGTTCCC TGAAATGAGT TAAGCTTGAC AGCTAAGCTA GAGGGCCGAG
  ACATTTACAT ATCCTGTGAG TTTTCTTTGG ACCTAAATGA CACTTGTCTG GTTATTCAGT
  TCCTGCTTTA AAGATACAAA GTAAAGCTAC TGTGCTGTCA TTCTCTCCTC AAAATACTTT
  TTGAATGGGT TCTCTCCGAA TGCTGTCCAG CAAAGTTCCT AGAACGCCAA AGGCTACCTT
  W
  TAAAAAAAAA AAAACTGTTT GGGGCTTAAA CCTTCTCCAT GACCTTTTCA AGCCCAGAGT
  GACAAAGCAG TCTTTCAGAG AAGTGATGGT TTTTAAGTAA TAACTACATA CACAGTTTAC
  ACAACAGTGT GCAAACAATA CCGATACAAA TTTCCCAACA TCAAATGTCA GAAAAGAAAG
  TGAACAGAAA CAAAATCTAA AACACTGAGA GTTAGCTTCT TGGTCACACA TTGGAGCTCA
  AATTACTTTG ATCCCGAATT TTAAAACATT ATTTCAGCAA ATATGGGTAT GTGAGCGCAT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45353553	mCV22628425	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29680692					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126773825 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	862 bp proximal
Gm75308	predicted gene, 75308	788 bp upstream
Rr564422	regulatory region 564422	424 bp proximal
Rr564423	regulatory region 564423	1150 bp proximal
Rr564424	regulatory region 564424	1183 bp proximal
Rr564425	regulatory region 564425	1320 bp proximal
Sppl2a	signal peptide peptidase like 2A	within coordinates
Tssr26084	transcription start site region 26084	within coordinates
Tssr26085	transcription start site region 26085	1088 bp downstream
Tssr26086	transcription start site region 26086	1217 bp downstream
Tssr26087	transcription start site region 26087	1248 bp downstream
Tssr26088	transcription start site region 26088	1310 bp downstream
Tssr26089	transcription start site region 26089	1324 bp downstream
Tssr26090	transcription start site region 26090	1962 bp downstream