rs29681580 SNP Detail

Summary

• ID
  rs29681580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74367820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTA TTCTGGAAAA GAGCTATCAA
  R
  AAACACATGG CTAATGCTAG CGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45852733	mCV23193219	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss148664264	ENSMUSSNP6180836	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G		G
ss321569534	CHEV_5_74603184	CHEVERUD	SCREENING_POP	f	SNP						A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29681580					SNP	A	A	A	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74367820 () rs orientation: forward

Symbol	Name	Function Class
Rr613253	regulatory region 613253	113 bp distal
Rr613254	regulatory region 613254	1221 bp proximal
Scfd2	Sec1 family domain containing 2	within coordinates