rs29681635 SNP Detail

Summary

• ID
  rs29681635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123151296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGT AGGCAAAAGG AAAGGTCTTT
  R
  GGATAGTTGA GCACAGGTGT AAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45852927	mCV24883840	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	A
ss149192638	ENSMUSSNP161218	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss321670262	CHEV_5_123463242	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29681635					SNP	G	G	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123151296 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16567	CpG island 16567	1280 bp proximal
Gm2479	predicted gene 2479	within coordinates
Gm44574	predicted gene 44574	359 bp upstream
Orai1	ORAI calcium release-activated calcium modulator 1	1841 bp upstream
Rr399336	regulatory region 399336	1550 bp upstream
Rr620045	regulatory region 620045	264 bp proximal
Rr620046	regulatory region 620046	522 bp proximal
Rr620047	regulatory region 620047	1351 bp proximal
Tssr48743	transcription start site region 48743	1777 bp upstream
Tssr48744	transcription start site region 48744	1911 bp upstream
Tssr53182	transcription start site region 53182	353 bp upstream
Tssr53183	transcription start site region 53183	1607 bp downstream