rs29682164 SNP Detail

Summary

• ID
  rs29682164
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59788313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGTGTGT CCGTGTTATT GTTTTGTTTC ATTTTTATAA
  TTTTTTTTTC ATGATGGGGT TTCTCTGTGC ATCTCTCTGG TGGCTGTCCA GGAACTTGCT
  W
  TGTACACCAG ACCGGCCTTG AACTCAAAGA TTCTCCTGCT TCTGCCTCCA CAGTGAGTGC
  TGGGATTAAA AGTGTGCACC ACCATGCCTG GCTGCAGGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39106384	mCV23287392	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss149079705	ENSMUSSNP1718263	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29682164					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59788313 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Tssr4093	transcription start site region 4093	262 bp upstream
Tssr122874	transcription start site region 122874	327 bp upstream
Tssr122875	transcription start site region 122875	310 bp upstream