rs29682292 SNP Detail

Summary

• ID
  rs29682292
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38223173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC AACAAAGGGG AAGGGGGTGG
  K
  AGAGGCGGGG CGGCCTGAGG TGCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39108840	mCV23910872	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss148892399	ENSMUSSNP4760176	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29682292					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38223173 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5461	CpG island 5461	1567 bp distal
Riok1	RIO kinase 1	within coordinates
Rr281252	regulatory region 281252	772 bp distal
Rr369679	regulatory region 369679	1742 bp downstream
Tssr119342	transcription start site region 119342	1887 bp downstream
Tssr122127	transcription start site region 122127	1265 bp upstream
Tssr122128	transcription start site region 122128	1245 bp upstream
Tssr122129	transcription start site region 122129	1213 bp upstream