rs29682486 SNP Detail

Summary

• ID
  rs29682486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20368624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAT ACAGAGGCCT AGAAGAGACA
  Y
  TAAGTTATGA AGGGTACAGG GTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39107284	mCV27590378	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss51076133	NES14368646	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T		C	T	C	T		C	C	C	C		C
ss324281236	CHEV_13_20276323	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29682486					SNP	C	C	C	C	C	T	C	C	T	C	T	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51076133	NES14368646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20368624 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5309	CpG island 5309	796 bp proximal
Elmo1	engulfment and cell motility 1	within coordinates
Rr270987	regulatory region 270987	224 bp distal
Rr270988	regulatory region 270988	377 bp proximal
Rr270989	regulatory region 270989	1177 bp proximal
Rr281054	regulatory region 281054	within coordinates
Rr403595	regulatory region 403595	609 bp upstream
Tssr118580	transcription start site region 118580	486 bp upstream
Tssr118581	transcription start site region 118581	544 bp upstream
Tssr118582	transcription start site region 118582	833 bp upstream
Tssr118583	transcription start site region 118583	868 bp upstream
Tssr118584	transcription start site region 118584	949 bp upstream
Tssr118585	transcription start site region 118585	962 bp upstream