rs29682520 SNP Detail

Summary

• ID
  rs29682520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:145918072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA ATAAGTTGTG TTAGTTATGG
  R
  TTTTTATCAC AGCAATAGAA AAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45852942	mCV23513677	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss144640545	ENSMUSSNP4724473	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29682520					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145918072 () rs orientation: forward

Symbol	Name	Function Class
Cyp3a25	cytochrome P450, family 3, subfamily a, polypeptide 25	within coordinates
Tssr49764	transcription start site region 49764	290 bp downstream
Tssr54456	transcription start site region 54456	877 bp upstream
Tssr54457	transcription start site region 54457	23 bp upstream
Tssr54458	transcription start site region 54458	within coordinates
Tssr54459	transcription start site region 54459	38 bp downstream
Tssr54460	transcription start site region 54460	59 bp downstream
Tssr54461	transcription start site region 54461	194 bp downstream