rs29682543 SNP Detail

Summary

• ID
  rs29682543
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129916453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACC TGACTGACCT TGATTTTCAC
  W
  GTCTCCTGCC TTAGCCTCTC AAGTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45850976	mCV25038818	ABI	CRAMUS_MOUSE	f	SNP		A	T
ss144477398	ENSMUSSNP291121	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321692414	CHEV_5_130363482	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29682543					SNP	T	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129916453 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	142 bp upstream
Cpgi16684	CpG island 16684	within coordinates
Rr399383	regulatory region 399383	103 bp downstream
Rr621372	regulatory region 621372	153 bp distal
Rr621373	regulatory region 621373	within coordinates
Tssr53498	transcription start site region 53498	455 bp upstream
Tssr53499	transcription start site region 53499	307 bp upstream
Tssr53500	transcription start site region 53500	183 bp upstream
Tssr53501	transcription start site region 53501	132 bp upstream