rs29682710 SNP Detail

Summary

• ID
  rs29682710
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77866716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCGGCA TCAAGGCTGT
  GGATAGCCTG GTGCCCATTG GCCGGGGTCA GCGTGAGCTG ATTATTGGTG ACAGACAGAC
  TGGGTAATGA CTCAAAATCT GTTAAAAGTT CTAACTAACA TGGATTGCTA GTAAATAATT
  ATGCATCTTG GGATGGTGAA TGCTGTGGTT GTAATGAGGC AGAAGCAGGT GAAAATTAAC
  W
  GTGGTATAGC ACAACTGTGC TTGGGGATCC TGCATTTAGT GACATTTTTG CCTCTCTTAA
  AGGAAAACAT CGATTGCCAT TGACACAATC ATCAACCAGA AACGTTTCAA CGATGGGACC
  GACGAGAAGA AGAAGCTGTA CTGCATCTAC GTCGCGATTG GTCAGAAGCG GTCCACTGTG
  GCTCAGCTGG TGAAGAGACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39605956	mCV22975769	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss147555403	ENSMUSSNP1852032	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29682710					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77866716 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	within coordinates
Tssr152043	transcription start site region 152043	405 bp downstream
Tssr152044	transcription start site region 152044	219 bp downstream
Tssr152045	transcription start site region 152045	830 bp upstream
Tssr152046	transcription start site region 152046	1054 bp upstream
Tssr153960	transcription start site region 153960	444 bp upstream