About   Help   FAQ
rs29683683 SNP Detail
Summary
  • ID
    rs29683683
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr13:77194917 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ACAAG TCCCCTCTAT TACTCTGTAG
    R
    AGCTTCATAT ATGAAAAACA GCATT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
PWD/PhJ
SM/J
ss39108060 mCV24822578 ABI CRAMUS_MOUSE f SNP A A A G A
ss49119528 NES12425968 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G G
ss144698298 ENSMUSSNP755208 ENSEMBL ENSEMBL_Sanger f SNP A A
ss324446867 CHEV_13_77186059 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
PWD/PhJ
SM/J
rs29683683 SNP A A A A A A A G G A A A A G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49119528 NES12425968 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:77194917 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D13Mit231 DNA segment, Chr 13, Massachusetts Institute of Technology 231 945 bp proximal
Rr273760 regulatory region 273760 1117 bp distal
Rr281681 regulatory region 281681 within coordinates
Slf1 SMC5-SMC6 complex localization factor 1 within coordinates
Tssr123272 transcription start site region 123272 607 bp downstream
Tssr123273 transcription start site region 123273 827 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory