rs29683760 SNP Detail

Summary

• ID
  rs29683760
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29941433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCGGTAC TGCTCACAAG
  GCCGAACGGG TTCCAGTCTA GGCTGTAGTC TTGTGTCTAG GTCTGGGGCT TAAGGTGTTC
  CTGGTCTGGG CCGGTTGTAG ATTGGGTCTG TGGAGAGCGT TTGCCGTTCT TGGTCAGGCC
  TAGCTCGGGG CTTAGCTGCG GTCCGCTTCC CTAGTTCTCT GGTCGAAGGT GGCGGTTGGG
  Y
  CCGGCACGCG CTAGGTCGGC CGCAGAGCTC CAGGAGTAGG CAAGGCTGGT GTCACCCAGT
  CCTGGCGTCC TCACTGCATT CTGCAAGCAA GGGGTCAGGT GGCCTGCGAA GAGCAGGACT
  CCCATGGAAG GCGCAATCAC CGGCCCAGGC CTCCAGGCAG CGAAGGGGGC CGGGTGGGAA
  GGCCAAGGCG GTTTCCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45851579	mCV22652742	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss47652135	NES10269262	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	C	T	T	T	C	T	T	C	T
ss148182983	ENSMUSSNP942611	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29683760					SNP	C	C	T	T	T	C	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47652135	NES10269262	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29941433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	within coordinates
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	within coordinates
Gm5129	predicted gene 5129	499 bp upstream
Gm72214	predicted gene, 72214	within coordinates
Rr377760	regulatory region 377760	within coordinates
Rr608877	regulatory region 608877	3 bp distal
Rr608878	regulatory region 608878	646 bp distal
Rr608879	regulatory region 608879	within coordinates
Rr608880	regulatory region 608880	237 bp proximal
Rr608881	regulatory region 608881	497 bp proximal
Rr608882	regulatory region 608882	1729 bp proximal
Tssr45546	transcription start site region 45546	698 bp downstream
Tssr45547	transcription start site region 45547	684 bp downstream
Tssr45548	transcription start site region 45548	604 bp downstream
Tssr45549	transcription start site region 45549	585 bp downstream
Tssr45550	transcription start site region 45550	446 bp downstream
Tssr45551	transcription start site region 45551	424 bp downstream
Tssr45552	transcription start site region 45552	295 bp downstream
Tssr45553	transcription start site region 45553	16 bp upstream
Tssr50466	transcription start site region 50466	542 bp upstream
Tssr50467	transcription start site region 50467	510 bp upstream
Tssr50468	transcription start site region 50468	490 bp upstream
Tssr50469	transcription start site region 50469	7 bp upstream