rs29684359 SNP Detail

Summary

• ID
  rs29684359
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:55979441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTCCCT CCCTCTCTCC
  CTCCCTCCCT CCTGGCCTCG CCCGCGCCCT CCCCGTCGCA GCCACCTTCC CGCCGCCTCA
  CCTCCCCCCC TCTCCCGCGG CCTCACCGCG CCTCTCCCTC CTTCCCCGGT GACACACGAA
  TTTCTCCCTT GGCCGCACAA AAGAAACGCA TCTGGCCAGC TAGCCCCGGG CGGCTGGTGC
  M
  CACCTTGGGG GCCCCAAGTG ACTTGTTTCG CTGAGAGTCA ACTCCTGTCT GGGCCACCTC
  AAGTCCCCAG CCACGGGAGA GAACAACTTA GAATGAGTGA AGGTTCGCTG AGCAGGATCG
  CTCTGAGCCG GCGCCTCCGA GCCAGCGCCA GGGCAGTCAG TGGCAGAGCC GGGGGGCCGG
  TTCCCGGTTG CTGCAGCTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39106019	mCV25143049	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29684359					SNP	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55979441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5690	CpG island 5690	within coordinates
Gm47071	predicted gene, 47071	within coordinates
Pitx1	paired-like homeodomain transcription factor 1	Intron
Rr480568	regulatory region 480568	within coordinates
Rr480569	regulatory region 480569	1156 bp proximal
Tssr122726	transcription start site region 122726	367 bp upstream
Tssr122727	transcription start site region 122727	348 bp upstream
Tssr122728	transcription start site region 122728	233 bp upstream