rs29684505 SNP Detail

Summary

• ID
  rs29684505
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20788995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGTCAAT GTCTATGCTT
  AAATATTAGA CATGGTAAGA AGGTACTAGG TACTAAACAG GGAACTGTGT TAAATATCAA
  GGAAGGGAAT GTTTGGCCTG CTGCTAAGCA TAGACATTGG AATACATTCT ACCAACATCT
  TAATTAGCAA TATGAGGGAA TCCAATTCTT CATGTTCCAT AGGGAAACAC TATTGCACAT
  M
  AGAGCATGCT TCTAGAGTCA GGTTGCCTGA GTGCAAAACC TACCCACTCT CATTTTTTCC
  TACATCACTT CATCCTCTGT GCTTTGATTT TCTTAACTTG AAAAACATAT GATAACAGAA
  GTTCCTGTTT CTGTTAAATA GAAGGTACAG AGAGGGTGCG AGTATTAGAT GAATACCAAA
  GACTTCCCAG CACATGCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39106606	mCV24006509	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		A
ss61757685	NES17682691	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		A	A	A	A	A	A	A	A	C
ss148771546	ENSMUSSNP2029226	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29684505					SNP	C	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61757685	NES17682691	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20788995 () rs orientation: forward

Symbol	Name	Function Class
Elmo1	engulfment and cell motility 1	within coordinates
Tssr118599	transcription start site region 118599	569 bp upstream
Tssr118600	transcription start site region 118600	612 bp upstream