rs29684900 SNP Detail

Summary

• ID
  rs29684900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123270511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGCACA TGTGCCGTGA
  GCCATGCAGA GGTCAGAGGA TGGCTTGTGG TCCAGTCAAT GCTTCTCCTT TTCTCACTTA
  TTATGTACAT TTTTCTTTTG TTTAAAAAAA AAGTCATATT TTCTGGCACT AGTATTTTCA
  AGGGATGAGC ACACATAGCT TTAATTTATA TAGTTGTGGC AAAGAAGACA TTAAAATGCC
  Y
  GCTTATCTCT CTCGCAGTCC TTTTGGCTCG GCACTGGCAG ACTTCTGGAT GCCCGTGGAT
  CTGTACATCG GAGGAAAGGA ACATGCTGTC ATGCACTTGT TCTATGCACG ATTCCTCAGT
  CATTTTTGCC ACGACCAAAA GATGGTGAAG CACAGGTGAG CATTCGTTGT ACTTTACAAA
  ACAGTTCTGT TCACAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
ss46329113	mCV23337033	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T		T
ss50808722	NES14203067	PERLEGEN	MM_PANEL2	f	SNP					C		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
rs29684900					SNP	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50808722	NES14203067	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123270511 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	311 bp distal
Rr203065	regulatory region 203065	478 bp distal
Rr208064	regulatory region 208064	711 bp distal