rs29685202 SNP Detail

Summary

• ID
  rs29685202
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115080012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA AAAAAGAGAA AAGGTGGGGA
  R
  GGGATCACAA GGAGAGACGG GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45853170	mCV25153015	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss149119415	ENSMUSSNP5038963	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29685202					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115080012 () rs orientation: forward

Symbol	Name	Function Class
2210016L21Rik	RIKEN cDNA 2210016L21 gene	201 bp upstream
Cpgi16342	CpG island 16342	104 bp proximal
Rr399277	regulatory region 399277	95 bp upstream
Rr618069	regulatory region 618069	591 bp distal
Rr618070	regulatory region 618070	within coordinates
Rr618071	regulatory region 618071	229 bp proximal
Tssr48192	transcription start site region 48192	223 bp upstream
Tssr48193	transcription start site region 48193	263 bp upstream