rs29685347 SNP Detail

Summary

• ID
  rs29685347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114483104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCAGTTC CTCGGCAGCC
  ATGCTAAAGG CCAGGCATGA CTTACACTGG GAATTTCAGC AGCGACACGT GGAGAATGCG
  GGATTCCTGG GACTCCACAA CCAGTTAGCA TAGCCAGAGT AGCAGGAGAG CTTCGTCTCA
  AAACAAAGGT GGGCAGCCCC TGAGGCCTCC ACTGCTGAGG CTGACTCCCG GCTTCTCAGC
  R
  CGTCACACAG GACAGCCACA CAGGTGCGCA AGCTTACATC CACACAGCCA GCCACACATG
  CGCAACAAGC AACAAAGCTG CATTTGAACT AAAAAGAGAA TTCTAACTTT CACTGGAAAG
  CTCAAGTTCA CCAAGAGCAA CATTTCTTGA AGTTAGTAAG TTAACTTTGG GAAAATGTCT
  GCCACACACT AACGACCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39108477	mCV25042965	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss62042804	NES17146374	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G		G	G	A	A	A	G	A	A	G
ss145304705	ENSMUSSNP6753477	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29685347					SNP	G	G	A	G	G	G	G	G	G	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62042804	NES17146374	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114483104 () rs orientation: forward

Symbol	Name	Function Class
Ndufs4	NADH:ubiquinone oxidoreductase core subunit S4	within coordinates
Rr275010	regulatory region 275010	904 bp distal
Rr278350	regulatory region 278350	1259 bp proximal
Rr282460	regulatory region 282460	1305 bp distal