rs29685348 SNP Detail

Summary

• ID
  rs29685348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53628448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGC TGGTCTGAGG GAACCCATAG
  R
  TGTAGAAATC TTAGAAGATT AAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss39108478	mCV22986319	ABI	CRAMUS_MOUSE	f	SNP	G		A	G
ss61805325	NES17735803	PERLEGEN	MM_PANEL2	f	SNP		G		G	G	G		A	G	A
ss324342446	CHEV_13_53569781	CHEVERUD	SCREENING_POP	f	SNP							G				G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs29685348					SNP	G	G	A	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61805325	NES17735803	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53628448 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5623	CpG island 5623	1256 bp distal
Cpgi5624	CpG island 5624	1194 bp proximal
Gm33763	predicted gene, 33763	within coordinates
Msx2	msh homeobox 2	1632 bp upstream
Rr281405	regulatory region 281405	1247 bp distal
Rr281406	regulatory region 281406	752 bp proximal
Tssr122586	transcription start site region 122586	1687 bp upstream
Tssr122587	transcription start site region 122587	1625 bp upstream
Tssr122588	transcription start site region 122588	1602 bp upstream
Tssr122589	transcription start site region 122589	1562 bp upstream