rs29685704 SNP Detail

Summary

• ID
  rs29685704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108793808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTCTGTG TGTCCTTTCT
  TCTCCTTTTC TGGTGTCTCT CAACGCCTTC TGTTTCCTCT GTCCCACAGT TTATCTTATC
  TCCTGTGATA GATAGGCCTG CTCATTGGAA TGGACAAACT TCCTGGGAAA ATGACCAGCT
  GCAGCCCTAG AAGGCCTGAC GCTGCCTGCA TTCATGGGAA AGAGCCAAAA GGCCAGCACA
  Y
  ACAGGCTATC TTCTCACCGG TGGCCATGCT GGCAGAGAAT GCTCCCTTTT CCCATCGAAC
  TGAGCTATGG AGGAGTCGTA CCTGTATGAG CAGAGTGGAA ATTAGGGGCA AAAACAATAG
  CAAAGAGTTT AGATTCAGAA GTTCTAGGCT TAAGGCATAG CTCTGCCTTT TACTTTTGTG
  TAAGAGTAAA GTAGGACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46870222	NES10706582	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29685704					SNP	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870222	NES10706582	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108793808 () rs orientation: forward

Symbol	Name	Function Class
Fndc7	fibronectin type III domain containing 7	Intron
Rr583339	regulatory region 583339	within coordinates