rs29685752 SNP Detail

Summary

• ID
  rs29685752
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108882698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCAGATGA ACTTCACTTT
  GAAAACAGGC TCTGTGTTTT TCTTACATGC TTGACTAACA CACCTTGAAA CACCTGTTGT
  CCACACAGGG AAGCTTCCGC CCGCTGCTGG CTTCGCTCCT AGCGTTTGAT CACAACCTGT
  TCATAGGCTC CAGATCCTAC CCTGAAACGG TAGTGAGAGG AAAACCTTCA GTTGAACTGC
  M
  GAGGCGGCAA CCTCCAGAGA ACTCTCCTCC CAGGCACGCC TGCTGGTTTC CTTTCCCCCT
  TTTGAGACAT GGTTTCTCTG TGTAGTTCTG GCTGTCTTGG AAAGCCAGTC TGGCCTAGGC
  TTTCTGGGAT TAAAGGCTGT GCTACCGCCA CCCAATCCTA AAATCAGTGT CAGTCAGGGC
  AGTACATAGG ATTTCCCTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46870930	NES10702495	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29685752					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870930	NES10702495	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108882698 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	Intron
Gm65815	predicted gene, 65815	within coordinates
Rr583360	regulatory region 583360	772 bp distal
Tssr35213	transcription start site region 35213	1109 bp downstream
Tssr35214	transcription start site region 35214	1168 bp downstream
Tssr35215	transcription start site region 35215	1185 bp downstream
Tssr35216	transcription start site region 35216	1311 bp downstream