rs29685897 SNP Detail

Summary

• ID
  rs29685897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53532308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTTGAT CCTCAGAGAG
  GGGAGTCAGG GAGTAGTATT TAAATAGTGT ATGTCTGGTT ATTCTCCAGG TGTAGTATGG
  TCAAAGGCTG CTACAAACAT TTAGATAACA AATGTTATCT GCACACCAAT TTGCATTTCC
  TGAGACTTGT CCGGAACTGC CATTGACACA GCAATTTTAC TTTTTAAAGG GCGGGGGTGG
  R
  GGGGGGGAGA AGTAAACTGA GTCTGGAGAG AGAGAGTTCA GTCAGTAAAG AGGGTCAGAG
  CTCCATCCCC AGCACCCATT ACTTTGGGGT GGAGAAAAGA AATCCCTGGG CTTCTCTGGG
  CCAGCTACCT TAGACCACTT GAATTTCTGG CCAGAGATAG CCCCTGTCTC AAAAAAGAAG
  GTACATGGCT CTTGAAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss39107785	mCV24544385	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29685897					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53532308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5620	CpG island 5620	693 bp distal
Rr403780	regulatory region 403780	669 bp downstream
Rr480032	regulatory region 480032	385 bp distal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1	907 bp upstream
Tssr122583	transcription start site region 122583	899 bp upstream