rs29686149 SNP Detail

Summary

• ID
  rs29686149
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:126167831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC TTCAAGTTAG TTTTCATTTA
  S
  GTTTCTGTAG CTGAAGTCTA TAAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45853284	mCV23122630	ABI	CRAMUS_MOUSE	f	SNP	C	C	C			G
ss51820866	NES14712571	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	G		G	G		G		G
ss149214420	ENSMUSSNP56998	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321676687	CHEV_5_126571137	CHEVERUD	SCREENING_POP	f	SNP									C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs29686149					SNP	C	C	C	C	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51820866	NES14712571	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:126167831 () rs orientation: forward

Symbol	Name	Function Class
D5Mit214	DNA segment, Chr 5, Massachusetts Institute of Technology 214	450 bp distal
Rr116253	regulatory region 116253	1631 bp distal
Rr116254	regulatory region 116254	1170 bp proximal