rs29686268 SNP Detail

Summary

• ID
  rs29686268
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106699092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAA CGTTACACAC CCGCGCGCGC
  Y
  GAGTGCGCGC GCGACCAGTA CGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46330590	mCV25234275	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss136940629	ENSMUSSNP719768	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323187387	CHEV_9_106724224	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29686268					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106699092 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	within coordinates
Dcaf1	DDB1 and CUL4 associated factor 1	within coordinates
Rr368848	regulatory region 368848	within coordinates
Rr401655	regulatory region 401655	553 bp upstream
Rr686402	regulatory region 686402	9 bp distal
Rr686403	regulatory region 686403	within coordinates
Tssr86935	transcription start site region 86935	1 bp upstream
Tssr86936	transcription start site region 86936	106 bp upstream
Tssr86937	transcription start site region 86937	130 bp upstream