rs29686315 SNP Detail

Summary

• ID
  rs29686315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:107464159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGT ACATATCCCA CTTCCACCAA
  Y
  ACAACTTCCA TAGAAATTCC TGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46329229	mCV22576894	ABI	CRAMUS_MOUSE	f	SNP		C	T	T
ss136948602	ENSMUSSNP5601104	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323191746	CHEV_9_107489291	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29686315					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107464159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	458 bp proximal
Gm16343	predicted gene 16343	within coordinates
Gm68835	predicted gene, 68835	1296 bp downstream
Hyal3	hyaluronoglucosaminidase 3	mRNA-UTR
Ifrd2	interferon-related developmental regulator 2	758 bp upstream
Rr401663	regulatory region 401663	377 bp upstream
Rr686552	regulatory region 686552	498 bp proximal
Rr686553	regulatory region 686553	693 bp proximal
Rr686554	regulatory region 686554	1687 bp proximal
Tssr87008	transcription start site region 87008	682 bp upstream
Tssr87009	transcription start site region 87009	713 bp upstream
Tssr87010	transcription start site region 87010	751 bp upstream
Tssr87011	transcription start site region 87011	797 bp upstream
Tssr87012	transcription start site region 87012	906 bp upstream