rs29686416 SNP Detail

Summary

• ID
  rs29686416
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124195241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGCGTGGTTG CATCCGCAAA CGCTCGGCAG TCACGGTTTC AAAATAAAAA ATGGAAAAAA
  AAAAAAAATC CTTGGCCCGG GCGCAGGCTG ATGGCATCAG CAAGTCAGGT CGCCGCGTGG
  AGGCCGTGCG CGCATGCGCA GTGACTTCCC CCGGCCACGG GCTCGCATGC GCTGGGGGTG
  TGCGCCGGCT TGGGGTCCCG ATGCGTATGC GCGTTGGGTT TCTGTTGCAG GCAGCGCACA
  TGCGCATTGC GTTTACTTCC AAGTTGGCTG CACATGCGTG TCGCAGAAGT GCGGGTCTGG
  M
  GAGTACAAAG AAGCCTGGCT TCGCGCATGC GTATCGTGAC GTATGACAGC GAGTATGGCC
  TGGTGCCATC AGTCATCCTG GAAGCTCCGC TCACTTTTAA AAAATAATCT CATTGGTGCC
  TAATTGTCAT TTATTTACTT ATCATTTGCA TATTCATGAA TCTCGTTTAC ATATTCTCAA
  GGTGCATTTG TTTATCGCCC CCCAAGCTGG ATTGGAAGAT GACGTCACCC TGTTGTTACC
  CACCGAGTGA CGCCTGGATG CTCCTCAGGC TCCGCCCCTT TTGGTCAGGA ATTGATGTCT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46329417	mCV24427026	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss134041028	ENSMUSSNP6832804	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29686416					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124195241 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	within coordinates
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	171 bp upstream
Tssr3090	transcription start site region 3090	1961 bp upstream
Tssr3091	transcription start site region 3091	1478 bp downstream
Tssr3092	transcription start site region 3092	1450 bp downstream
Tssr3093	transcription start site region 3093	1430 bp downstream
Tssr3094	transcription start site region 3094	1378 bp upstream
Tssr3095	transcription start site region 3095	1177 bp upstream
Tssr3096	transcription start site region 3096	1097 bp upstream
Tssr3097	transcription start site region 3097	1021 bp upstream
Tssr3098	transcription start site region 3098	670 bp upstream
Tssr3099	transcription start site region 3099	567 bp upstream
Tssr3100	transcription start site region 3100	542 bp upstream
Tssr3101	transcription start site region 3101	430 bp upstream
Tssr3102	transcription start site region 3102	287 bp upstream
Tssr3103	transcription start site region 3103	245 bp upstream
Tssr3104	transcription start site region 3104	153 bp upstream
Tssr3105	transcription start site region 3105	43 bp upstream