rs29686421 SNP Detail

Summary

• ID
  rs29686421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48940527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT AAAGGCAGGG TCTCAGTAGG
  Y
  AGCACCTGCC TGCCTCTGCC TCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46329422	mCV22641029	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136466284	ENSMUSSNP1297922	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29686421					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48940527 () rs orientation: forward

Symbol	Name	Function Class
1700042D02Rik	RIKEN cDNA 1700042D02 gene	within coordinates
Tssr85003	transcription start site region 85003	1087 bp downstream
Tssr85004	transcription start site region 85004	1649 bp upstream
Usp28	ubiquitin specific peptidase 28	within coordinates