rs29686531 SNP Detail

Summary

• ID
  rs29686531
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44218997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTAGA GACACTTCCT
  CAAAAATCAT TTTGTCTGTG TCCTATGTAA ATAAAAGTTT AGAGACAACA TAAAAATAGG
  TCAAGTTGAG CCAGGTGTTC ACAGGCCTGT AAACCCAAAT CTGCTGCAGC TGTGGAGGCA
  GAAAGATCCT ACAGGCAATG TCTCGAGAAA GAGAATGTAG CTGTGGTCAT GATACCTCAC
  Y
  TCTATAATCC TGTGTAGGCC TGGCTGGCCT TGAACTCACA GAGCTCTGCC TGCCTCTGCC
  TTCCGAGTGC TGGGATTAAA GGCATGCACC ACTACAACTA GCTACGATTT ACTTCTTTAA
  TGTCTACAAG TATTTGCTGC ATGGATGTGG GTACAGCATG TGTGTGCTGT GACTGCAGAG
  GCCAAAAGAG GGCATCAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46329524	mCV23033165	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss47687464	NES11335224	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		T	T	T	T	C	T	T	C	T
ss136393682	ENSMUSSNP3174765	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29686531					SNP	C	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687464	NES11335224	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44218997 () rs orientation: forward

Symbol	Name	Function Class
C2cd2l	C2 calcium-dependent domain containing 2-like	1537 bp downstream
Cpgi21648	CpG island 21648	1626 bp distal
Rr195005	regulatory region 195005	4 bp proximal
Rr206299	regulatory region 206299	1396 bp distal
Rr368726	regulatory region 368726	1605 bp downstream