rs29686588 SNP Detail

Summary

• ID
  rs29686588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108882914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGCTTTCT GGGATTAAAG GCTGTGCTAC CGCCACCCAA
  TCCTAAAATC AGTGTCAGTC AGGGCAGTAC ATAGGATTTC CCTGGAGAGC GATGAGAGGC
  Y
  TAATAATACT GTAGGTCTTA ATATATCTTT TTAGAAAGGG AAAAGCCCTT TTCACTCTCT
  CTCTCCTCTC CTTCCCCCCT TTCAGATAGG GTTTCAGGTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46870936	NES10702450	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29686588					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870936	NES10702450	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108882914 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	Intron
Gm65815	predicted gene, 65815	within coordinates
Rr583360	regulatory region 583360	988 bp distal
Tssr35213	transcription start site region 35213	893 bp downstream
Tssr35214	transcription start site region 35214	952 bp downstream
Tssr35215	transcription start site region 35215	969 bp downstream
Tssr35216	transcription start site region 35216	1095 bp downstream