rs29686615 SNP Detail

Summary

• ID
  rs29686615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45978750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGAGGT CTGTCTACCT
  CTGCCTTCTG AGTGCTGGCA TTAAAGGTGT ACACCAGTAT GTCAGGCAGG TTTGTTTTAA
  ACCTCTGAGA TTTGGAATCC AGTTTGATCA GTTTGGTGTG TGTATGTTTA CACAGGATGA
  CCTGATGTCA ACTTTAGGAA TCAGATACCA GAGTCATGGG CACACTGCTT AAGGCAGCCT
  R
  TATAGATTAG TTTAATACTC AGAATTTCTC AGGAAACCTG GAGTGGTCAA GCTACATAGC
  CAGTCTCCCA CTCTGTAGGT AGGCAGTGTA GAGGGAAATT TCATTTATTG TTTGGAGAAT
  TAGACAACTT TTACAACATG CTTAGTGACC AAGAATTCTG ATTTTTAACT CCACACCAGA
  GCCTCCAGTG AAAGCCGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46330396	mCV25176549	ABI	CRAMUS_MOUSE	f	SNP	A	G					G	G
ss47695630	NES11315577	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	A	A	G	G	G	G
ss136422458	ENSMUSSNP5391846	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29686615					SNP	A	G	G	G	G	G	G	G	G	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47695630	NES11315577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45978750 () rs orientation: forward

Symbol	Name	Function Class
Gm46110	predicted gene, 46110	within coordinates
Rr209232	regulatory region 209232	within coordinates
Rr383304	regulatory region 383304	1054 bp upstream
Sik3	SIK family kinase 3	within coordinates