rs29687050 SNP Detail

Summary

• ID
  rs29687050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50407275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAGTAA AGTTTTTACC
  CAAGGTCACT AGAACGCAAC AGAATTAATA TTTGAACCTA AGGAACTTAG CCAAAAGCCA
  GCCAGCCTTC TTAGCTCCTA CGCCACCCTT CCTCTCTTAG TCTAAGCAAA CTTTGCAGAG
  GTCACTATGG TGACTGCGTG CGCGTGATCT GCAGAGTCCC AGCCTGGAAG GTGAGCCACC
  R
  CACCAGACCT CCCCACTCTG CTGCTTGTCT CTCTCCTGTT TCCTGGAGAC GGTCACTAAG
  CAAATGCTCC TGCTGTAACA GGACTATGTC CCATCCCCTT GGGAAGTGGG CCTTTTCATA
  TCAGAGCAGG GAAGATAAGT CTGTAATTCA AGATGAACAC TAGGTGAGTG TGTGTATGAA
  TCCATTACCG CCAGGGCGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46331191	mCV24342321	ABI	CRAMUS_MOUSE	f	SNP	G	A					A
ss47706262	NES11306310	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A	A	A	G	A	A	A	A
ss136476439	ENSMUSSNP2251024	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29687050					SNP	G	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706262	NES11306310	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50407275 () rs orientation: forward

Symbol	Name	Function Class
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Tssr2866	transcription start site region 2866	1918 bp downstream
Tssr85023	transcription start site region 85023	1829 bp downstream
Tssr85024	transcription start site region 85024	1703 bp downstream
Tssr85025	transcription start site region 85025	1442 bp downstream
Tssr85026	transcription start site region 85026	801 bp upstream