rs29687254 SNP Detail

Summary

• ID
  rs29687254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:20180488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA AAAGACTTAT GTCTTGGTCA
  Y
  TAATGTTATT TATGGTTTGG TAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39108294	mCV24019684	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T		T
ss51078857	NES14360319	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T		T	T	C	T	T	T	T	T	T
ss148757579	ENSMUSSNP6341662	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29687254					SNP	T	T	C	T	C	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51078857	NES14360319	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:20180488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5307	CpG island 5307	396 bp distal
Gm5446	predicted gene 5446	514 bp upstream
Gm60857	predicted gene, 60857	within coordinates
Rr388071	regulatory region 388071	842 bp upstream