rs29687452 SNP Detail

Summary

• ID
  rs29687452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108817128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCCATGG GGCATCTCCC
  ACCCCCCCAT TTTAGTTTTA AAAATGAATT TAAACATACT TTCTAATATA ATAAGTTTTT
  CAGAATACAT TTGAAATTAA GTTGAAATAT TAGTCTCTAT TTTAAAACAA CCTGTCACAA
  AGGTACAGGG ACCCAAATTT TCAAAGTTAA CTGCATCCAC AATCATCACT CACCATGCTG
  Y
  ATCCACACTG AAAAGGCCTT ACCTTTTAAA AGCTAGTTTA AAAAAACTAC TTCATAGTAT
  TAGTTACACC TACTTAATAG CTTTTGTAAA AGAACACCAA GAGTACGTGT ATATTTTATA
  TATACAAAGT TAAAAGGTTT GTCTATAAAA AGCAATTAGT ACCTCAAAAA TCTCTCATTA
  ACCTGAACAA GTGGCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss46870450	NES10705594	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs29687452					SNP	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870450	NES10705594	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108817128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	936 bp proximal
Gm56806	predicted gene, 56806	1670 bp upstream
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	within coordinates
Rr77092	regulatory region 77092	within coordinates
Rr397945	regulatory region 397945	1757 bp upstream
Tssr31269	transcription start site region 31269	1994 bp upstream
Tssr35199	transcription start site region 35199	1988 bp upstream
Tssr35200	transcription start site region 35200	1746 bp upstream
Tssr35201	transcription start site region 35201	1723 bp upstream
Tssr35202	transcription start site region 35202	1640 bp downstream
Tssr35203	transcription start site region 35203	1858 bp downstream
Tssr35204	transcription start site region 35204	1875 bp downstream