rs29687454 SNP Detail

Summary

• ID
  rs29687454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108883937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAGATG TAAACAAATG
  GAATGATTAA TAAAAATAAA GTAAAATAAA ATTTACAAGA TAAAAATTGA GACAAGAAAA
  AACAGAAAGA AAGGAAGAAA ATGAAATATA CTAACAGAAT GATGGAGTAT ACTAAATAAC
  TTGCAGGCTT TGTGAAAAAA GCCATTCTGA GACAGCCTAT TTAGGTAATG GTCTCACCAA
  Y
  AGGAGATCTT CTGCTGCTGC TGTTATAACT GATGACTTAG GACTGTGGTT CTGTGCCATC
  AAGGAAGGAG CATGCTTCTC CCTGCTACTG TTTCTTGGTC TGGCAGAATA AAGGTTCTCA
  CTATGTCTTT TAGACAGCAG CTAGTTTTAC GTTTCGAAAG GGTCATAGTT CTATCCTTTC
  CCCAAAGCAT CCTGGGTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
ss46870942	NES10702368	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	C
ss320867128	CHEV_3_108779539	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J
rs29687454					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870942	NES10702368	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108883937 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	Intron
Gm65815	predicted gene, 65815	within coordinates
Rr583361	regulatory region 583361	1129 bp proximal
Rr583362	regulatory region 583362	1201 bp proximal
Tssr35213	transcription start site region 35213	123 bp upstream
Tssr35214	transcription start site region 35214	55 bp upstream
Tssr35215	transcription start site region 35215	35 bp upstream
Tssr35216	transcription start site region 35216	72 bp downstream