rs29687457 SNP Detail

Summary

• ID
  rs29687457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108883957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGATTAA TAAAAATAAA
  GTAAAATAAA ATTTACAAGA TAAAAATTGA GACAAGAAAA AACAGAAAGA AAGGAAGAAA
  ATGAAATATA CTAACAGAAT GATGGAGTAT ACTAAATAAC TTGCAGGCTT TGTGAAAAAA
  GCCATTCTGA GACAGCCTAT TTAGGTAATG GTCTCACCAA CAGGAGATCT TCTGCTGCTG
  Y
  TGTTATAACT GATGACTTAG GACTGTGGTT CTGTGCCATC AAGGAAGGAG CATGCTTCTC
  CCTGCTACTG TTTCTTGGTC TGGCAGAATA AAGGTTCTCA CTATGTCTTT TAGACAGCAG
  CTAGTTTTAC GTTTCGAAAG GGTCATAGTT CTATCCTTTC CCCAAAGCAT CCTGGGTGAT
  CAGGAGAACT TCAATATTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46870945	NES10702369	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29687457					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870945	NES10702369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108883957 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	Intron
Gm65815	predicted gene, 65815	within coordinates
Rr583361	regulatory region 583361	1109 bp proximal
Rr583362	regulatory region 583362	1181 bp proximal
Tssr35213	transcription start site region 35213	143 bp upstream
Tssr35214	transcription start site region 35214	75 bp upstream
Tssr35215	transcription start site region 35215	55 bp upstream
Tssr35216	transcription start site region 35216	52 bp downstream