rs29687460 SNP Detail

Summary

• ID
  rs29687460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108884093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCCATT CTGAGACAGC
  CTATTTAGGT AATGGTCTCA CCAACAGGAG ATCTTCTGCT GCTGCTGTTA TAACTGATGA
  CTTAGGACTG TGGTTCTGTG CCATCAAGGA AGGAGCATGC TTCTCCCTGC TACTGTTTCT
  TGGTCTGGCA GAATAAAGGT TCTCACTATG TCTTTTAGAC AGCAGCTAGT TTTACGTTTC
  R
  AAAGGGTCAT AGTTCTATCC TTTCCCCAAA GCATCCTGGG TGATCAGGAG AACTTCAATA
  TTGGCGCTGC ATGGAGGTGA AGGTCTTACT GTAAAAGTTA TCTGCAAGCC GGGCGTGGTG
  ACGCACGCCT TTAATCCCAG CATTTGGGAG GCAGGGGCAG GCGGATTTCT GAGTTTGAGG
  CCAGCCTGGT CTACAAAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46870948	NES10702370	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29687460					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870948	NES10702370	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108884093 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	Intron
Gm65815	predicted gene, 65815	within coordinates
Rr583361	regulatory region 583361	973 bp proximal
Rr583362	regulatory region 583362	1045 bp proximal
Tssr35213	transcription start site region 35213	279 bp upstream
Tssr35214	transcription start site region 35214	211 bp upstream
Tssr35215	transcription start site region 35215	191 bp upstream
Tssr35216	transcription start site region 35216	75 bp upstream