rs29687538 SNP Detail

Summary

• ID
  rs29687538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108915214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATCCCT CCATGGCCTC
  TGCATCAGCT CCTGCTTCCT GACCTGTTTG AGTTCCAGTC CTGACTTCCT TGGTGATAAA
  CTGCAGTATG GAAGTGTAAG CCGAATAAAC CCTTTCCTCC CCAACTTGCT TCTTGGTCAT
  GATGTTTGTG CAGGAATAGA AACCCTGACT AAGACACTAA GCTAACTATT CTAGGAATTA
  Y
  GTCAGAAATA AGAAGAAAAC ACAAATACTT CAAAGCCCCA AATCCTTGGT TTACATTGTT
  TTTTATTTGT TTATGAAATA TCAGTAATTC CCCAACTAAA CTAATTAGAA ACACATACTA
  TATTTTTATT TATTTGAAAA CACTCTTACA ATGTGGCATA TTTATAATGA TTCATGTACG
  AAATCATATA TGCTACCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46871326	NES10700615	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29687538					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871326	NES10700615	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108915214 () rs orientation: forward

Symbol	Name	Function Class
Eeig2	EEIG family member 2	within coordinates
Gm43221	predicted gene 43221	1543 bp downstream
Tssr35217	transcription start site region 35217	1181 bp downstream
Tssr35218	transcription start site region 35218	1220 bp downstream