rs29688047 SNP Detail

Summary

• ID
  rs29688047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21081995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCGGTG TGGTACTTAA
  CATCAATCCA TCAATACAAC TGCTAACAGA ATAAACAAAG TAACGTTTGT CTGGAGGACC
  AGGCTTCTCT CTGAAATAGC ATGCGAACAA CACATGCAGG TCTATGAATT TTGTGGGTTG
  GTGAAAACCA ACCCACAGAA GCCATCTAAT ACGGCAATAT GTGTTTAGGA GAACTAGGTT
  Y
  ACATTCCAGG CAGGAGAGCA TGGAAGCCCA CAGAAAACTT TGCTTTCAAA ATTTGGTCTC
  CAGACCCTAC AGGAGAGCAG CCAATGAATC AGGAGATTTT CCGGGATCCT GTGGTGGGTG
  TCAAAGACAG ATCAAGAAAT GTGCTCAAAA TCTCCTTTCC CTAGGCAGGA CTGATCATGG
  CTGGGTAAGA TCAAGGACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss46870835	NES10954853	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs29688047					SNP	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870835	NES10954853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21081995 () rs orientation: forward

Symbol	Name	Function Class
4930453H23Rik	RIKEN cDNA 4930453H23 gene	within coordinates
Rr394834	regulatory region 394834	within coordinates