rs29688056 SNP Detail

Summary

• ID
  rs29688056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21228992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCTCAG AATAGAAAAG
  CAGGCAAGGA AAGTGAGGAG GAGGAGGAGG AGGAGGAGGA AGAAGAAGAA GAAGAAACAG
  AAGAGAAGAA AAAGGCAGCC TGGACCAAGC CAGGTTCAGG CAAGAAACGG AAGCAGAATG
  AGACAGCGGT TGAAGCAGCA ACTCCTCAAG CGAAGAAAGT TAAGCTCCAG ATACCCAATG
  Y
  GTTTCCAAAA AGGAAGAAGG GAGAAAAAAG GGCATCTTCC CCTTTCCCAA GGGTCAGGGA
  GAAGGAGATT GAGGTGGGCT CTCGAGTAGC AGACAATTCC TTTGATGCCA AGCGAGGTGC
  AGCTGGAGAC TGGGGCGAGC GCGCCAATCA GGTTCTGAAG TTCACCAAAG GCAAGTCCTT
  CCGGCTTGAA AAAATGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46871924	NES10953040	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29688056					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871924	NES10953040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21228992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22654	CpG island 22654	1662 bp distal
Gm5124	predicted pseudogene 5124	within coordinates
Rr8526	regulatory region 8526	391 bp distal
Rr9667	regulatory region 9667	609 bp proximal
Tssr160702	transcription start site region 160702	1902 bp downstream
Tssr160703	transcription start site region 160703	1854 bp downstream
Tssr160704	transcription start site region 160704	1823 bp downstream