rs29688059 SNP Detail

Summary

• ID
  rs29688059
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21229113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAACGGA AGCAGAATGA
  GACAGCGGTT GAAGCAGCAA CTCCTCAAGC GAAGAAAGTT AAGCTCCAGA TACCCAATGC
  GTTTCCAAAA AGGAAGAAGG GAGAAAAAAG GGCATCTTCC CCTTTCCCAA GGGTCAGGGA
  GAAGGAGATT GAGGTGGGCT CTCGAGTAGC AGACAATTCC TTTGATGCCA AGCGAGGTGC
  W
  GCTGGAGACT GGGGCGAGCG CGCCAATCAG GTTCTGAAGT TCACCAAAGG CAAGTCCTTC
  CGGCTTGAAA AAATGAAGAA GAAGCAGCAG CAGCGAGGCA GAGGCTCCAT CTCCGTCCAG
  GTCAATTCCG TCAAGTTTGA CAGTGAGTGA CCTGTGGTCA TCTTTGGCAG AGGAAGGGTG
  GTGTTGGGAG GTTGGCACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46871927	NES10953041	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29688059					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46871927	NES10953041	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21229113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22654	CpG island 22654	1783 bp distal
Gm5124	predicted pseudogene 5124	within coordinates
Rr8526	regulatory region 8526	512 bp distal
Rr9667	regulatory region 9667	488 bp proximal
Tssr160703	transcription start site region 160703	1975 bp downstream
Tssr160704	transcription start site region 160704	1944 bp downstream