rs29688290 SNP Detail

Summary

• ID
  rs29688290
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:145068763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATGC AGAGTAGGAC GGGCTCCCCG
  Y
  GTGGTCTCAC TAGGAGGGCT GCCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45853961	mCV25297275	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		C
ss51533892	NES14867244	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		C	C	C	T		C	C	T	C		T
ss321712391	CHEV_5_145892822	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29688290					SNP	T	T	C	T	C	T	C	C	C	C	C	T	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533892	NES14867244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145068763 () rs orientation: forward

Symbol	Name	Function Class
Pdap1	PDGFA associated protein 1	within coordinates
Rr624550	regulatory region 624550	1468 bp proximal
Rr624551	regulatory region 624551	1506 bp proximal
Tssr49741	transcription start site region 49741	473 bp downstream
Tssr54419	transcription start site region 54419	929 bp downstream
Tssr54420	transcription start site region 54420	987 bp downstream