rs29688395 SNP Detail

Summary

• ID
  rs29688395
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108817580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCAAGAC AAGAAAAATT
  GGATGTGTTT TACTTTACAT GCTCTAGCGA AAATGCTTGA AGACATGAAG ACTATTAATA
  CTCATTAAAA TATAAATTAA CCTCGGAGGC CTGGAAGGTT ATTTTTTAAA CTACCTAATT
  TGTAGGGAAG TGGAGACTCT AGTTAGTGAG ACCAAAATCA ATGGCCCAAC ACCAAACCGG
  W
  AAAAATAAAC CTAATTAGCC ATTCATTTAA CCAGGGAAAT GCATTTATTG GCGATTGAGC
  ATGATTAATA GTGCATACCT CTACCTGCGA CCCTGGGCTG CTCCGAGCCT CGCTGCAAGA
  CTGAGTCAAT CCTGCTAACG AAACAAGAAC TGAGACAAGA GTGCAGTGAG GAGGCGCCAG
  GTGAGCTCCC CAGCACAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
ss46870453	NES10705596	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ
rs29688395					SNP	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46870453	NES10705596	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108817580 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13711	CpG island 13711	484 bp proximal
Gm56806	predicted gene, 56806	1218 bp upstream
Prpf38b	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	within coordinates
Rr77092	regulatory region 77092	within coordinates
Rr397945	regulatory region 397945	1305 bp upstream
Tssr31269	transcription start site region 31269	1542 bp upstream
Tssr31270	transcription start site region 31270	1564 bp upstream
Tssr35202	transcription start site region 35202	1188 bp downstream
Tssr35203	transcription start site region 35203	1406 bp downstream
Tssr35204	transcription start site region 35204	1423 bp downstream